参考文献
[1]罗钰翔.中国主要生物质废物环境影响与污染治理策略研究[D].北京:清华大学,2010.
[2]林宗虎.生物质能的利用现况及展望[J].自然杂志,2010,32(4):196-201.
[3]Cornelissen S,Koper M,Deng Y Y.The role of bioenergy in a fully sustainable global energy system[J].Biomass Bioenerg,2012,41:21-33.
[4]国家能源局.生物质能发展“十二五”规划.北京,2012.
[5]瞿贤.环境因素对生活垃圾产甲烷代谢途径及过程的影响:稳定碳同位素和分子生物表征[D].上海:同济大学,2007.
[6]林丽.中国国情下厌氧消化技术处理城市混合收集生活垃圾可行性研究[D].成都:西南交通大学,2009.
[7]De Vrieze J,Hennebel T,Boon N,et al.Methanosarcina:the rediscovered methanogen for heavy duty biomethanation[J].Bioresour Technol,2012,112:1-9.
[8]Chen Y,Cheng J J,Creamer K S.Inhibition of anaerobic digestion process:a review[J].Bioresour Technol,2008,99(10):4044-4064.
[9]De Baere L,Mattheeuws B.Anaerobic digestion of the organic fraction of municipal solid waste in Europe-status,experience and prospects[M]//Thomé-Kozmiensky K J,Thiel S.Nietwerder(eds).Waste Management:Vol.3 Recycling and Recovery.Nietwerder:TK-Verlag,2012.517-526.
[10]European Environment Agency.Biodegradable municipal waste management[M]Europe:Technology and market issues.Copenhagen,2002.
[11]吕凡,何品晶,邵立明,等.易腐性有机垃圾的产生与处理技术途径比较[J].环境污染治理技术与设备,2003,4(8):46-50.
[12]任南琪,赵丹,陈晓蕾,等.厌氧生物处理丙酸产生和积累的原因及控制对策[J].中国科学(B辑化学),2002,32(1):83-89.
[13]吴云.餐厨垃圾厌氧消化影响因素及动力学研究[D].重庆:重庆大学,2009.
[14]张记市.城市生活垃圾厌氧消化的关键生态因子强化研究[D].昆明:昆明理工大学,2007.
[15]李东,孙永明,张宇,等.城市生活垃圾厌氧消化处理技术的应用研究进展[J].生物质化学工程,2008,4(42):43-50.
[16]何品晶,潘修疆,吕凡,等.pH对有机垃圾厌氧水解和酸化速率的影响[J].中国环境科学,2006,26(1):57-61.
[17]Kayhanian M.Performance of a high-solids anaerobic digestion process under various ammonia concentrations[J].J Chem Technol Biotechnol,1994,59(4):349-352.
[18]Lins P,Malin C,Wagner A O,et al.Reduction of accumulated volatile fatty acids by an acetate-degrading enrichment culture[J].FEMS Microbiol Ecol,2010,71(3):469-478.
[19]Wang J Y,Liu X Y,Kao J CM,et al.Digestion of pre-treated food waste in a hybrid anaerobic solid-liquid(HASL)system[J].J Chem Technol Biotechnol,2006,81(3):345-351.
[20]Martin D J,Xue E.The reaction front hypothesis in solid-state digestion:Estimation of minimum size of viable seed body[J].Appl Biochem Biotechnol,2003,109(1-3):155-166.
[21]Lins P,Reitschuler C,Illmer P.Development and evaluation of inocula combating high acetate concentrations during the start-up of an anaerobic digestion[J].Bioresour Technol,2012,110:167-173.
[22]Westerholm M,Leven L,Schnürer A.Bioaugmentation of syntrophic acetate-oxidizing culture in biogas reactors exposed to increasing levels of ammonia[J].Appl Environ Microbiol,2012,78(21):7619-7625.
[23]Hori T,Haruta S,Ueno Y,et al.Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester[J].Appl Environ Microbiol,2006,72(2):1623-1630.
[24]Angelidaki I,Ahring B K.Thermophilic anaerobic digestion of livestock waste:the effect of ammonia[J].Appl Microbiol Biotechnol,1993,38(4):560-564.
[25]Fujishima S,Miyahara T,Noike T.Effect of moisture content on anaerobic digestion of dewatered sludge:ammonia inhibition to carbohydrate removal and methane production[J].Water Sci Technol,2000,41(3):119-127.
[26]Gallert C,Bauer S,Winter J.Effect of ammonia on the anaerobic degradation of protein by a mesophilic and thermophilic biowaste population[J].Appl Environ Microbiol,1998,50(4):495-501.
[27]Sung S W,Liu T.Ammonia inhibition on thermophilic anaerobic digestion[J].Chemosphere,2003,53(1):43-52.
[28]Zeeman G,Wiegant W M,Koster-Treffers M E,et al.The influence of the total-ammonia concentration on the thermophilic digestion of cow manure[J].Agric Wastes,1985,14(1):19-35.
[29]Wu D,Lu F,Gao H,et al.Mesophilic bio-liquefaction of lincomycin manufacturing biowaste:the influence of total solid content and inoculum to substrate ratio[J].Bioresour Technol,2011,102(10):5855-5862.
[30]Hedderich R,Whitman W B.Physiology and biochemistry of the methaneproducing archaea[M]//Dworkin M,Falkow S,Rosenberg E,et al.(eds).Prokaryotes:A handbook on the biology of bacteria.3 ed.New York:Springer,2006.1050-1079.
[31]钱泽澍,闽航.沼气发酵微生物学[M].杭州:浙江科学技术出版社,1985.
[32]Rittmann B E,Mccarty P L.Environmental biotechnology:Principles and applications[M].Beijing:Tsinghua University Press,2005.
[33]任南琪,王爱杰,马放.产酸发酵微生物生理生态学[M].北京:科学出版社,2005.
[34]Demirel B,Scherer P.The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane:a review[J].Rev Environ Sci Biotechnol,2008,7(2):173-190.
[35]Negri E D,Mata-Alvarez J,Sans C,et al.A mathematical model of volatile fatty acids(VFA)production in a plug-flow reactor treating the organic fraction of the municipal solid waste(MSW)[J].Water Sci Technol,1993,27(2):201-208.
[36]Pind P F,Angelidaki I,Ahring B K.Dynamics of the anaerobic process:Effects of volatile fatty acids[J].Biotechnol Bioeng,2003,82(7):791-801.
[37]Steinberg L M,Regan J M.Response of lab-scale methanogenic reactors inoculated from different sources to organic loading rate shocks[J].Bioresour Technol,2011,102(19):8790-8798.
[38]Vavilin V A,Qu X,Mazeas L,et al.Methanosarcina as the dominant aceticlastic methanogens during mesophilic anaerobic digestion of putrescible waste[J].Antonie Van Leeuwenhoek,2008,94(4):593-605.
[39]Hattori S.Syntrophic acetate-oxidizing microbes in methanogenic environments[J].Microbes Environ,2008,23(2):118-127.
[40]Karakashev D,Batstone D J,Trably E,et al.Acetate oxidation is the dominant methanogenic pathway from acetate in the absence of Methanosaetaceae[J].Appl Environ Microbiol,2006,72(7):5138-5141.
[41]Barker H A.On the biochemistry of the methane fermentation[J].Arch Microbiol,1936,7(1-5):404-419.
[42]Zinder S H,Koch M.Non-aceticlastic methanogenesis from acetate:acetate oxidation by a thermophilic syntrophic coculture[J].Arch Microbiol,1984,138(3):263-272.
[43]Stams A J.Metabolic interactions between anaerobic bacteria in methanogenic environments[J].Antonie Van Leeuwenhoek,1994,66(1-3):271-294.
[44]Hattori S,Kamagata Y,Hanada S,et al.ThermacetogeniumpHaeum gen.nov.,sp.nov.,a strictly anaerobic,thermophilic,syntrophic acetateoxidizing bacterium[J].Int J Syst Evol Microbiol,2000,50(4):1601-1609.
[45]Lee M J,Zinder S H.Hydrogen partial pressure in a thermophilic acetateoxidizing methanogenic cocluture[J].Appl Environ Microbiol,1988,54(6):1457-1461.
[46]Schnürer A,Svensson B H,Schink B.Enzyme activities in and energetics of acetate metabolism by the mesophilic syntrophically acetate-oxidizing anaerobe Clostridium ultunense[J].FEMS Microbiol Lett,1997,154(2):331-336.
[47]Westerholm M.Biogas production through the syntrophic acetate-oxidising pathway:Characterization and detection of syntrophic acetate-oxidising bacteria[D].Uppsala:Swedish University of Agricultural Sciences,2012.
[48]Schink B.Energetics of syntrophic cooperation in methanogenic degradation[J].Microbiol Mol Biol Rev,1997,61(2):262-280.
[49]农业部厌氧微生物重点开放实验室.产甲烷细菌及其研究方法[M].成都:成都科技大学出版社,1997.
[50]Sakai S,Imachi H,Hanada S,et al.Methanocella paludicola gen.nov.,sp.nov.,a methane-producing archaeon,the first isolate of the lineage“Rice Cluster I”,and proposal of the new archaeal order Methanocellales ord.nov[J].Int J Syst Evol Microbiol,2008,58(4):929-936.
[51]Paul K,Nonoh J O,Mikulski L,et al.“Methanoplasmatales,”Thermoplasmatales-related archaea in termite guts and other environments,are the seventh order of methanogens[J].Appl Environ Microbiol,2012,78(23):8245-8253.
[52]Whitman W B,Bowen T L,Boone D R.The methanogenic bacteria[M]//Dworkin M,Falkow S,Rosenberg E,et al.(eds).Prokaryotes:A handbook on the biology of bacteria.3 ed.New York:Springer,2006,165-207.
[53]Karakashev D,Batstone D J,Angelidaki I.Influence of environmental conditions on methanogenic compositions in anaerobic biogas reactors[J].Appl Environ Microbiol,2005,71(1):331-338.
[54]Leven L,Eriksson A,Schnürer A.Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste[J].FEMS Microbiol Ecol,2007,59(3):683-693.
[55]Liu Y,Whitman W B.Metabolic,phylogenetic,and ecological diversity of the methanogenic archaea[J].Ann N Y Acad Sci,2008,1125(1):171-189.
[56]Ryan P,Forbes C,Colleran E.Investigation of the diversity of homoacetogenic bacteria in mesophilic and thermophilic anaerobic sludges using the formyltetrahydrofolate synthetase gene[J].Water Sci Technol,2008,57(5):675-680.
[57]Nettmann E,Bergmann I,Pramschufer S,et al.Polyphasic analyses of methanogenic archaeal communities in agricultural biogas plants[J].Appl Environ Microbiol,2010,76(8):2540-2548.
[58]Lee M J,Zinder S H.Isolation and characterization of a thermophilic bacterium which oxidizes acetate in syntrophic association with a methanogen and which grows acetogenically on H2-CO2[J].Appl Environ Microbiol,1988,54(1):124-129.
[59]Kamagata Y,Mikami E.Diversity of acetotrophic methanogens in anaerobic digestion[M]//Hattori T,Ishida Y,Maruyama Y,et al.(eds).Recent advances in microbial ecology.Tokyo:Japan Scientific Societies Press,1989,459-464.
[60]Balk M,Weijma J,Stams A J.Thermotoga lettingae sp.nov.,a novel thermophilic,methanol-degrading bacterium isolated from a thermophilic anaerobic reactor[J].Int J Syst Evol Microbiol,2002,52(4):1361-1368.
[61]Schnürer A,Schink B,Svensson B H.Clostridium ultunense sp.nov.,a mesophilic bacterium oxidizing acetate in syntrophic association with a hydrogenotrophic methanogenic bacterium[J].Int J Syst Bacteriol,1996,46(4):1145-1152.
[62]Westerholm M,Roos S,Schnürer A.Syntrophaceticusschinkii gen.nov.,sp.nov.,an anaerobic,syntrophic acetate-oxidizing bacterium isolated from a mesophilic anaerobic filter[J].FEMS Microbiol Lett,2010,309(1):100-104.
[63]Westerholm M,Roos S,Schnürer A.Tepidanaerobacter acetatoxydans sp.nov.,an anaerobic,syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes[J].Syst Appl Microbiol,2011,34(4):260-266.
[64]Hori T,Noll M,Igarashi Y,et al.Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA[J].Appl Environ Microbiol,2007,73(1):101-109.
[65]Liu F H,Conrad R.Thermoanaerobacteriaceae oxidize acetate in methanogenic rice field soil at 50℃[J].Environ Microbiol,2010,12(8):2341-2354.
[66]Gray N D,Sherry A,Grant R J,et al.The quantitative significance of Syntrophaceae and syntrophic partnerships in methanogenic degradation of crude oil alkanes[J].Environ Microbiol,2011,13(11):2957-2975.
[67]Schwarz J I,Lueders T,Eckert W,et al.Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret(Israel)by stable isotope probing of rRNA[J].Environ Microbiol,2007,9(1):223-237.
[68]Conrad R,Claus P,Casper P.Stable isotope fractionation during the methanogenic degradation of organic matter in the sediment of an acidic bog lake,Lake Grosse Fuchskuhle[J].Limnol Oceanogr,2010,55(5):1932-1942.
[69]Conrad R,Klose M,Claus P,et al.Methanogenic pathway,13C isotope fractionation,and archaeal community composition in the sediment of two clear-water lakes of Amazonia[J].Limnol Oceanogr,2010,55(2):689-702.
[70]Kotsyurbenko O R,Friedrich M W,Simankova M V,et al.Shift from acetoclastic to H2-dependent methanogenes is in a West Siberian peat bog at lowpH values and isolation of an acidophilic Methanobactetium strain[J].Appl Environ Microbiol,2007,73(7):2344-2348.
[71]Mayumi D,Mochimaru H,Yoshioka H,et al.Evidence for syntrophic acetate oxidation coupled to hydrogenotrophic methanogenesis in the hightemperature petroleum reservoir of Yabase oil field(Japan)[J].Environ Microbiol,2011,13(8):1995-2006.
[72]Conrad R,Klose M.Stable carbon isotope discrimination in rice field soil during acetate turnover by syntrophic acetate oxidation or acetoclastic methanogenesis[J].Geochim Cosmochim Ac,2011,75(6):1531-1539.
[73]Huang L N,Zhou H,Zhu S,et al.Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill[J].FEMS Microbiol Ecol,2004,50(3):175-183.
[74]Petersen S P,Ahring B.Acetate oxidation in a thermophilic anaerobic sewage-sludge digestor:the importance of non-aceticlastic methanogenesis from acetate[J].FEMS Microbiol Ecol,1991,86(2),149-158.
[75]Qu X,Vavilin V A,Mazeas L,et al.Anaerobic biodegradation of cellulosic material:Batch experiments and modelling based on isotopic data and focusing on aceticlastic and non-aceticlastic methanogenesis[J].Waste Manage,2009,29(6):1828-1837.
[76]Shigematsu T,Tang Y,Kobayashi T,et al.Effect of dilution rate on metabolic pathway shift between aceticlastic and nonaceticlastic methanogenesis in chemostat cultivation[J].Appl Environ Microbiol,2004,70(7):4048-4052.
[77]Westerholm M,Dolfing J,Sherry A,et al.Quantification of syntrophic acetate-oxidizing microbial communities in biogas processes[J].Environ Microbiol Rep,2011,3(4):500-505.
[78]Schnürer A,Zellner G,Svensson B H.Mesophilic syntrophic acetate oxidation during methane formation in biogas reactors[J].FEMS Microbiol Ecol,1999,29(3):249-261.
[79]Sasaki D,Hori T,Haruta S,et al.Methanogenic pathway and community structure in a thermophilic anaerobic digestion process of organic solid waste[J].J Biosci Bioeng,2011,111(1):41-46.
[80]Shimada T,Morgenroth E,Tandukar M,et al.Syntrophic acetate oxidation in two-phase(acid-methane)anaerobic digesters[J].Water Sci Technol,2011,64(9):1812-1820.
[81]Lay J J,Li Y Y,Noike T.Influences ofpH and moisture content on the methane production in high-solids sludge digestion[J].Water Res,1997,31(6):1518-1524.
[82]Krulwich T A.Alkaliphiles:“basic”molecular problems ofpH tolerance and bioenergetics[J].Mol Microbiol,1995,15(3):403-410.
[83]Krulwich T A.Alkaliphilic prokaryotes[M]//Dworkin M,Falkow S,Rosenberg E,et al.(eds).The Prokargotes:an evolving electronic resource for the microbial community.New York:Springer,2000.309-336.
[84]Krulwich T A,Ito M,Gilmour R,et al.Energetic problems of extremely alkaliphilic aerobes[J].Biochim Biophys Acta,1996,1275(1-2):21-26.
[85]Hoehler T,Gunsalus R P,Mcinerney M J.Environmental constraints that limit methanogenesis[M]//Timmis K N(eds).Handbook of hydrocarbon and lipid microbiology.Berlin:Springer Berlin Heidelberg,2010,635-654.
[86]Krulwich T A.Alkaliphilic prokaryotes[M]//Dworkin M,Falkow S,Rosenberg E,et al.(eds).Prokaryotes:A handbook on the biology of bacteria.3ed.New York:Springer,2006,283-308.
[87]Herrero A A,Gomez R F,Snedecor B,et al.Growth inhibition of Clostridium thermocellum by carboxylic acids:a mechanism based on uncoupling by weak acids[J].Appl Microbiol Biotechnol,1985,22(1):53-62.
[88]Menzel U,Gottschalk G.The internalpH of Acetobacterium wieringae and Acetobacter aceti during growth and production of acetic acid[J].Arch Microbiol,1985,143:47-51.
[89]Brul S,Coote P.Preservative agents in foods:Mode of action and microbial resistance mechanisms[J].Int J Food Microbiol,1999,50(1-2):1-17.
[90]Sprott G D,Shaw K M,Jarrell K F.Ammonia/potassium exchange in methanogenic bacteria[J].J Biol Chem,1984,259(20):12602-12608.
[91]Sprott G D,Patel G B.Ammonia toxicity in pure cultures of methanogenic bacteria[J].Syst Appl Microbiol,1986,7(2-3):358-363.
[92]Sprott G D,Shaw K M,Jarrell K F.Methanogenesis and the K+transport system are activated by divalent cations in ammonia-treated cells of Methanospirillum hungatei[J].J Biol Chem,1985,260(16):9244-9250.
[93]Hoehler T M.An energy balance concept for habitability[J].Astrobiology,2007,7(6):824-838.
[94]Zinder S.Physiological ecology of methanogens[M]//Ferry J F(eds).Methanogenesis.New York:Chapman and Hall,1993,128-206.
[95]Horn M A,Matthies C,Kusel K,et al.Hydrogenotrophic methanogenesis by moderately acid-tolerant methanogens of a methane-emitting acidic peat[J].Appl Environ Microbiol,2003,69(1):74-83.
[96]Kim I S,Hwang M H,Jang N J,et al.Effect of lowpH on the activity of hydrogen utilizing methanogen in bio-hydrogen process[J].Int J Food Microbiol,2004,29(11):1133-1140.
[97]Taconi K A,Zappi M E,Todd F W,et al.Feasibility of methanogenic digestion applied to a lowpH acetic acid solution[J].Bioresour Technol,2007,98(8):1579-1585.
[98]Maestrojuan G,Boone D.Characterization of Methanosarcina barkeri MST and 227,Methanosarcina mazei S-6T,and Methanosarcina vacuolata Z-761T[J].Int J Syst Bacteriol,1991,41(2):267-274.
[99]Staley B F,de los Reyes F L,Barlaz M A.Effect of spatial differences in microbial activity,pH,and substrate levels on methanogenesis initiation in refuse[J].Appl Environ Microbiol,2011,77(7):2381-2391.
[100]Sandberg M,Ahring B K.Anaerobic treatment of fish meal process wastewater in a UASB reactor at highpH[J].Appl Microbiol Biotechnol,1992,36(6):800-804.
[101]van Leerdam R C,De Bok F A,Bonilla-Salinas M,et al.Methanethiol degradation in anaerobic bioreactors at elevatedpH(8):Reactor performance and microbial community analysis[J].Bioresour Technol,2008,99(18):8967-8973.
[102]Siegert I,Banks C.The effect of volatile fatty acid additions on the anaerobic digestion of cellulose and glucose in batch reactors[J].Process Biochem,2005,40(11):3412-3418.
[103]Wang Y Y,Zhang Y L,Wang J B,et al.Effects of volatile fatty acid concentrations on methane yield and methanogenic bacteria[J].Biomass Bioenerg,2009,33(5):848-853.
[104]Amani T,Nosrati M,Mousavi S M.Using enriched cultures for elevation of anaerobic syntrophic interactions between acetogens and methanogens in a high-load continuous digester[J].Bioresour Technol,2011,102(4):3716-3723.(https://www.daowen.com)
[105]Anderson G K,Donnelly T,Mckeown K J.Identification and control of inhibition in the anaerobic treatment of industrial wastewaters[J].Process Biochem,1982,17:28-32.
[106]Fukuzaki S,Nishio N,Nagai S.Kinetics of the methanogenic fermentation of acetate[J].Appl Environ Microbiol,1990,56(10):3158-3163.
[107]Bräuer S L,Yashiro E,Ueno N G,et al.Characterization of acid-tolerant H/CO-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State[J].FEMS Microbiol Ecol,2006,57(2):206-216.
[108]Vankessel J,Russell J B.The effect ofpH on ruminal methanogenesis[J].FEMS Microbiol Ecol,1996,20(4):205-210.
[109]Clarens M,Moletta R.Kinetic studies of acetate fermentation by Methanosarcina sp.MSTA-1[J].Appl Microbiol Biotechnol,1990,33(2):239-244.
[110]LepistöR,Rintala J A.Acetate treatment in 70℃upflow anaerobic sludgeblanket(UASB)reactors:Start-up with thermophilic inocula and the kinetics of the UASB sludges[J].Appl Microbiol Biotechnol,1995,43(6):1001-1005.
[111]Illmer P,Gstraunthaler G.Effect of seasonal changes in quantities of biowaste on full scale anaerobic digester performance[J].Waste Manag,2009,29(1):162-167.
[112]Jetten M S M,Stams A J M,Zehnder A J B.Methanogenesis from acetate:a comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp[J].FEMS Microbiol Rev,1992,88(3-4):181-198.
[113]Raskin L,Poulsen L K,Noguera D R,et al.Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization[J].Appl Environ Microbiol,1994,60(4):1241-1248.
[114]Liu T,Sung S.Ammonia inhibition on thermophilic aceticlastic methanogens[J].Water Sci Technol,2002,45(10):113-120.
[115]De Baere L A,Devocht M,Van Assche P,et al.Influence of high NaCl and NH4Cl salt levels on methanogenic associations[J].Water Res,1984,18(5):543-548.
[116]Wiegant W M,Zeeman G.The mechanism of ammonia inhibition in the thermophilic digestion of livestock wastes[J].Agric Wastes,1986,16(4):243-253.
[117]Schnürer A,Nordberg A.Ammonia,a selective agent for methane production by syntrophic acetate oxidation at mesophilic temperature[J].Water Sci Technol,2008,57(5):735-740.
[118]Calli B,Mertoglu B,Inanc B,et al.Methanogenic diversity in anaerobic bioreactors under extremely high ammonia levels[J].Enzyme Microb Technol,2005,37(4):448-455.
[119]Calli B,Mertoglu B,Inanc B,et al.Community changes during start-up in methanogenic bioreactors exposed to increasing levels of ammonia[J].Environ Technol,2005,26(1):85-91.
[120]Fotidis I A,Karakashev D,Kotsopoulos T A,et al.Effect of ammonium and acetate on methanogenic pathway and methanogenic community composition[J].FEMS Microbiol Ecol,2013,83(1):38-48.
[121]Ejlertsson J,Karlsson A,Lagerkvist A,et al.Effects of co-disposal of wastes containing organic pollutants with municipal solid waste-a landfill simulation reactor study[J].Adv Environ Res,2003,7(4):949-960.
[122]Farquhar G J,Rovers F A.Gas production during refuse decomposition[J].Water Air Soil Poll,1973,2(4):483-495.
[123]Pohland F G,Cross W,King L W.Codisposal of disposable diapers with shredded municipal refuse in simulated landfills[J].Water Sci Technol,1993,27(2):209-223.
[124]Epstein I R.The consequences of imperfect mixing in autocatalytic chemical and biological systems[J].Nature,1995,374(6520):321-327.
[125]Liu T C,Ghosh S.Phase separation during anaerobic fermentation of solid substrates in an innovative plug-flow reactor[J].Water Sci Technol,1997,36(6-7):303-310.
[126]Vavilin V A,Angelidaki I.Anaerobic degradation of solid material:Importance of initiation centers for methanogenesis,mixing intensity,and 2D distributed model[J].Biotechnol Bioeng,2005,89(1):113-122.
[127]Vavilin V A,Lokshina L Y,Jokela J P,et al.Modeling solid waste decomposition[J].Bioresour Technol,2004,94(1):69-81.
[128]Sowers K R,Gunsalus R P.Adaptation for growth at various saline concentrations by the archaebacterium Methanosarcina thermophila[J].J Bacteriol,1988,170(2):998-1002.
[129]Karlsson A,Einarsson P,Schnürer A,et al.Impact of trace element addition on degradation efficiency of volatile fatty acids,oleic acid andpHenyl acetate and on microbial populations in a biogas digester[J].J Biosci Bioeng,2012,114(4):446-452.
[130]Mummey D,Holben W,Six J,et al.Spatial stratification of soil bacterial populations in aggregates of diverse soils[J].Microb Ecol,2006,51(3):404-411.
[131]Vavilin V A,Shchelkanov M Y,Rytov S V.Effect of mass transfer on concentration wave propagation during anaerobic digestion of solid waste[J].Water Res,2002,36(9):2405-2409.
[132]Kim M,Ahn Y H,Speece R E.Comparative process stability and efficiency of anaerobic digestion;mesophilic vs.thermophilic[J].Water Res,2002,36(17):4369-4385.
[133]Picioreanu C,Batstone D J,van Loosdrecht M C.Multidimensional modelling of anaerobic granules[J].Water Sci Technol,2005,52(1-2):501-507.
[134]Oremland R S,Capone D G.Use of specific inhibitors in biogeochemistry and microbial ecology[J].Adv Microb Ecol,1988,10:285-383.
[135]Zinder S H,Anguish T,Cardwell S C.Selective inhibition by 2-bromoethanesulfonate of methanogenesis from acetate in a thermophilic anaerobic digestor[J].Appl Environ Microbiol,1984,47(6):1343-1345.
[136]Conrad R,Klose M.How specific is the inhibition by methyl fluoride of acetoclastic methanogenesis in anoxic rice field soil?[J]FEMS Microbiol Ecol,1999,30(1):47-56.
[137]JanssenpH,Frenzel P.Inhibition of methanogenesis by methyl fluoride:Studies of pure and defined mixed cultures of anaerobic bacteria and archaea[J].Appl Environ Microbiol,1997,63(11):4552-4557.
[138]Conrad R.Quantification of methanogenic pathways using stable carbon isotopic signatures:a review and a proposal[J].Org Geochem,2005,36(5):739-752.
[139]Fey A,Claus P,Conrad R.Temporal change of13C-isotope signatures and methanogenic pathways in rice field soil incubated anoxically at different temperatures[J].Geochim Cosmochim Ac,2004,68(2):293-306.
[140]Penning H,Conrad R.Quantification of carbon flow from stable isotope fractionation in rice field soils with different organic matter content[J].Org Geochem,2007,38(12):2058-2069.
[141]Qu X,Mazeas L,Vavilin V A,et al.Combined monitoring of changes in δ13CH4and archaeal community structure during mesophilic methanization of municipal solid waste[J].FEMS Microbiol Ecol,2009,68(2):236-245.
[142]Grossin-Debattista J.Isotopic fractionation(13C/12C)generated by methanogenesis:Contribution of the understanding of biodegradation processes occurring during anaerobic digestion:application to municipal solid waste anaerobic treatment processes[D].Bordeaux,France:University Bordeaux 1,2011.
[143]Hori T,Sasaki D,Haruta S,et al.Detection of active,potentially acetateoxidizing syntrophs in an anaerobic digester by flux measurement and formyltetrahydrofolate synthetase(FTHFS)expression profiling[J].Microbiol-SGM,2011,157(7):1980-1989.
[144]Miller L G,Kalin R M,Mccauley S E,et al.Large carbon isotope fractionation associated with oxidation of methyl halides by methylotrophic bacteria[J].Proc Natl Acad Sci U.S.A.,2001,98(10):5833-5837.
[145]Conrad R,Klose M,Claus P.Pathway of CH4formation in anoxic rice field soil and rice roots determined by13C-stable isotope fractionation[J].Chemosphere,2002,47(8):797-806.
[146]Chan O C,Claus P,Casper P,et al.Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment[J].Environ Microbiol,2005,7(8):1139-1149.
[147]Conrad R,Claus P,Casper P.Characterization of stable isotope fractionation during methane production in the sediment of a eutrophic lake,Lake Dagow,Germany[J].Limnol Oceanogr,2009,54(2):457-471.
[148]Galand P E,Yrjala K,Conrad R.Stable carbon isotope fractionation during methanogenesis in three boreal peatland ecosystems[J].Biogeosciences,2010,7(11):3893-3900.
[149]Nakagawa F,Yoshida N,Sugimoto A,et al.Stable isotope and radiocarbon compositions of methane emitted from tropical rice paddies and swamps in Southern Thailand[J].Biogeochemistry,2002,61(1):1-19.
[150]Hornibrook E,Longstaffe F J,Fyfe W S.Evolution of stable carbon isotope compositions for methane and carbon dioxide in freshwater wetlands and other anaerobic environments[J].Geochim Cosmochim Ac,2000,64(6):1013-1027.
[151]Goevert D,Conrad R.Effect of substrate concentration on carbon isotope fractionation during acetoclastic methanogenesis by Methanosarcina barkeri and M.acetivorans and in rice field soil[J].Appl Environ Microbiol,2009,75(9):2605-2612.
[152]Cardinale M,Brusetti L,Quatrini P,et al.Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities[J].Appl Environ Microbiol,2004,70(10):6147-6156.
[153]Radajewski S,Mcdonald I R,Murrell J C.Stable-isotope probing of nucleic acids:a window to the function of uncultured microorganisms[J].Curr Opin Biotechnol,2003,14(3):296-302.
[154]Chauhan A,Ogram A.Phylogeny of acetate-utilizing microorganisms in soils along a nutrient gradient in the Florida Everglades[J].Appl Environ Microbiol,2006,72(10):6837-6840.
[155]Neufeld J D,Schafer H,Cox M J,et al.Stable-isotope probing implicates Methylophaga spp.and novel Gammaproteobacteria in marine methanol and methylamine metabolism[J].ISME J,2007,1(6):480-491.
[156]Li T,Mazeas L,Sghir A,et al.Insights into networks of functional microbes catalysing methanization of cellulose under mesophilic conditions[J].Environ Microbiol,2009,11(4):889-904.
[157]Dumont M G,Murrell JC.Stable isotope probing-linking microbial identity to function[J].Nat Rev Microbiol,2005,3(6):499-504.
[158]Heid C A,Stevens J,Livak K J,et al.Real time quantitative PCR[J].Genome Res,1996,6(10):986-994.
[159]Hofman-Bang J,Zheng D,Westermann P,et al.Molecular ecology of anaerobic reactor systems[J].Adv Biochem Eng Biotechnol,2003,81:151-203.
[160]Bergmann I.Characterization of methanogenic Archaea communities in biogas reactors by quantitative PCR[D].Berlin,Germany:Prozesswissenschaften der Technischen Universität Berlin,2012.
[161]Zhang T,Fang H H P.Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples[J].Appl Environ Microbiol,2006,70(3):281-289.
[162]Yu Y,Lee C,Kim J,et al.Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction[J].Biotechnol Bioeng,2005,89(6):670-679.
[163]Yu Y,Kim J,Hwang S.Use of real-time PCR for group-specific quantification of aceticlastic methanogens in anaerobic processes:population dynamics and community structures[J].Biotechnol Bioeng,2006,93(3):424-433.
[164]Lee C,Kim J,Hwang K,et al.Quantitative analysis of methanogenic community dynamics in three anaerobic batch digesters treating different wastewaters[J].Water Res,2009,43(1):157-165.
[165]Song M,Shin S G,Hwang S.Methanogenic population dynamics assessed by real-time quantitative PCR in sludge granule in upflow anaerobic sludge blanket treating swine wastewater[J].Bioresour Technol,2010,101(Suppl 1):S23-S28.
[166]Nettmann E,Bergmann I,Mundt K,et al.Archaea diversity within a commercial biogas plant utilizing herbal biomass determined by 16S rDNA and mcr A analysis[J].J Appl Microbiol,2008,105(6):1835-1850.
[167]Bustin S A.Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays[J].J Mol Endocrinol,2000,25(2):169-193.
[168]Xu K,Liu H,Du G,et al.Real-time PCR assays targeting formyltetrahydrofolate synthetase gene to enumerate acetogens in natural and engineered environments[J].Anaerobe,2009,15(5):204-213.
[169]Wong mL,Medrano J F.Real-time PCR for mRNA quantitation[J].Biotechniques,2005,39(1):75-85.
[170]Springer E,Sachs M S,Woese C R,et al.Partial gene sequences for the A subunit of methyl-coenzyme M reductase(mcr I)as apHylogenetic tool for the family Methanosarcinaceae[J].Int J Syst Bacteriol,1995,45(3):554-559.
[171]Steinberg L M,Regan J M.mcr A-targeted real-time quantitative PCR method to examine methanogen communities[J].Appl Environ Microbiol,2009,75(13):4435-4442.
[172]Luton P E,Wayne J M,Sharp R J,et al.The mcr A gene as an alternative to 16S rRNA in thepHylogenetic analysis of methanogen populations in landfill[J].Microbiol-SGM,2002,148(11):3521-3530.
[173]Lueders T,Chin K J,Conrad R,et al.Molecular analyses of methylcoenzyme M reductase alpha-subunit(mcr A)genes in rice field soil and enrichment cultures reveal the methanogenicpHenotype of a novel archaeal lineage[J].Environ Microbiol,2001,3(3):194-204.
[174]Lovell C R,Leaphart A B.Community-level analysis:Key genes of CO2-reductive acetogenesis[J].Methods Enzymol,2005,397:454-469.
[175]Gagen E J,Denman S E,Padmanabha J,et al.Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach[J].Appl Environ Microbiol,2010,76(23):7785-7795.
[176]Mardis E R.The impact of next-generation sequencing technology on genetics[J].Trends Genet,2008,24(3):133-141.
[177]王兴春,杨致荣,王敏,等.高通量测序技术及其应用[J].中国生物工程杂志,2012,32(1):109-114.
[178]http://www.gsjunior.com/instrument-workflow.php.
[179]Schlüter A,Bekel T,Diaz N N,et al.The metagenome of a biogasproducing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology[J].J Biotechnol,2008,136(1-2):77-90.
[180]Zhang H,Banaszak J E,Parameswaran P,et al.Focused-Pulsed sludge pre-treatment increases the bacterial diversity and relative abundance of acetoclastic methanogens in a full-scale anaerobic digester[J].Water Res,2009,43(18):4517-4526.
[181]Amann R I,Krumholz L,Stahl D A.Fluorescent-oligonucleotide probing of whole cells for determinative,phylogenetic,and environmental studies in microbiology[J].J Bacteriol,1990,172(2):762-770.
[182]Crocetti G,Murto M,Bjornsson L.An update and optimisation of oligonucleotide probes targeting methanogenic Archaea for use in fluorescence in situ hybridisation(FISH)[J].J Microbiol Methods,2006,65(1):194-201.
[183]Rogers S W,Moorman T B,Ong S K.Fluorescent in situ hybridization and micro-autoradiography applied to ecophysiology in soil[J].Soil Sci Soc Am J,2007,71(2):620-631.
[184]Pernthaler A,Pernthaler J,Amann R.Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria[J].Appl Environ Microbiol,2002,68(6):3094-3101.
[185]Wagner M,NielsenpH,Loy A,et al.Linking microbial community structure with function:fluorescence in situ hybridizationmicroautoradiography and isotope arrays[J].Curr Opin Biotechnol,2006,17(1):83-91.
[186]Li T,Wu T D,Mazeas L,et al.Simultaneous analysis of microbial identity and function using NanoSIMS[J].Environ Microbiol,2008,10(3):580-588.
[187]Rastogi G,Sani R K.Molecular techniques to assess microbial community structure,function,and dynamics in the environment[M]//Ahmad I,Ahmad F,Pichtel J(eds).Microbes and microbial technology:Agricultural and environmental applications.New York:Springer,2011,29-57.
[188]http://www.biovisible.com/indexRD.php?page=fish.
[189]International Organization for Standardization.ISO/DIS 11734.Water quality-Evaluation of the“ultimate”anaerobic biodegradability of organic compounds in digested sludge-Method by measurement of the biogas production[R].1995.
[190]Franke-Whittle I H,Goberna M,Insam H.Design and testing of real-time PCR primers for the quantification of Methanoculleus,Methanosarcina,Methanothermobacter,and a group of uncultured methanogens[J].Can J Microbiol,2009,55(5):611-616.
[191]Ritalahti K M,Amos B K,Sung Y,et al.Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains[J].Appl Environ Microbiol,2006,72(4):2765-2774.
[192]Loy A,Lehner A,Lee N,et al.Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment[J].Appl Environ Microbiol,2002,68(10):5064-5081.
[193]López-Garcia P,López-López A,Moreira D,et al.Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front[J].FEMS Microbiol Ecol,2001,36(2-3):193-202.
[194]Raskin L,Stromley J M,Rittmann B E,et al.Group-specific 16SrRNaHybridization probes to describe natural communities of methanogens[J].Appl Environ Microbiol,1994,60(4):1232-1240.
[195]Dowd S E,Callaway T R,Wolcott R D,et al.Evaluation of the bacterial diversity in the feces of cattle using 16S r DNA bacterial tag-encoded FLX amplicon pyrosequencing(b TEFAP)[J].BMC Microbiol,2008,8(125).doi:10.1186/1471-2180-8-125.
[196]Takai K,Horikoshi K.Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes[J].Appl Environ Microbiol,2000,66(11):5066-5072.
[197]Koppar A,Pullammanappallil P.Single-stage,batch,leach-bed,thermophilic anaerobic digestion of spent sugar beet pulp[J].Bioresour Technol,2008,99(8):2831-2839.
[198]Anthonisen A C,Loehr R C,Prakasam T B,et al.Inhibition of nitrification by ammonia and nitrous acid[J].J Water Pollut Control Fed,1976,48(5):835-852.
[199]何品晶,吕凡,邵立明,等.稳定同位素表征有机物甲烷化代谢动力学[J].化学进展,2009,21(0203):540-549.
[200]Whiticar M J,Faber E,Schoell M.Biogenic methane formation in marine and freshwater environments:CO2reduction vs.acetate fermentationisotopic evidence[J].Geochim Cosmochim Ac,1986,50(5):693-709.
[201]Sakai S,Nakashimada Y,Inokuma K,et al.Acetate and ethanol production from H2and CO2by Moorella sp.using a repeated batch culture[J].J Biosci Bioeng,2005,99(3):252-258.
[202]Schink B.Energetic aspects of methanogenic feeding webs.in:Wall J D,Harwood C S,Demain A(eds).Bioenergy[J].Washington:American Society for Microbiology,2008.171-178.
[203]Goldberg R N,Kishore N,Lennen R M.Thermodynamic quantities for the ionization reactions of buffers[J].JpHys Chem Ref Data,2002,31(2):231-370.
[204]Hughes J B,Hellmann J J,Ricketts T H,Bohannan B J.Counting the uncountable statistical approaches to estimating microbial diversity[J].Appl Environ Microbiol,2001,67(10):4399-4406.
[205]Treusch A,Leininger S,Kletzin A,et al.Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling[J].Environ Microbiol,2005,7(12):1985-1995.
[206]Robinson R W,Aldrich H C,Hurst S F,et al.Role of the cell surface of Methanosarcina mazei in cell aggregation[J].Appl Environ Microbiol,1985,49(2):321-327.
[207]Xun L,Boone D R,Mah R A.Control of the life cycle of Methanosarcina mazei S-6 by manipulation of growth conditions[J].Appl Environ Microbiol,1988,54(8):2064-2068.